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Chemical genetics of rapamycin-insensitive TORC2 in S. cerevisiae.

Identifieur interne : 001067 ( Main/Exploration ); précédent : 001066; suivant : 001068

Chemical genetics of rapamycin-insensitive TORC2 in S. cerevisiae.

Auteurs : Joseph I. Kliegman [États-Unis] ; Dorothea Fiedler [États-Unis] ; Colm J. Ryan [Irlande (pays)] ; Yi-Fan Xu [États-Unis] ; Xiao-Yang Su [États-Unis] ; David Thomas [États-Unis] ; Max C. Caccese [États-Unis] ; Ada Cheng [États-Unis] ; Michael Shales [États-Unis] ; Joshua D. Rabinowitz [États-Unis] ; Nevan J. Krogan [États-Unis] ; Kevan M. Shokat [États-Unis]

Source :

RBID : pubmed:24360963

Descripteurs français

English descriptors

Abstract

Current approaches for identifying synergistic targets use cell culture models to see if the combined effect of clinically available drugs is better than predicted by their individual efficacy. New techniques are needed to systematically and rationally identify targets and pathways that may be synergistic targets. Here, we created a tool to screen and identify molecular targets that may synergize with new inhibitors of target of rapamycin (TOR), a conserved protein that is a major integrator of cell proliferation signals in the nutrient-signaling pathway. Although clinical results from TOR complex 1 (TORC1)-specific inhibition using rapamycin analogs have been disappointing, trials using inhibitors that also target TORC2 have been promising. To understand this increased therapeutic efficacy and to discover secondary targets for combination therapy, we engineered Tor2 in S. cerevisiae to accept an orthogonal inhibitor. We used this tool to create a chemical epistasis miniarray profile (ChE-MAP) by measuring interactions between the chemically inhibited Tor2 kinase and a diverse library of deletion mutants. The ChE-MAP identified known TOR components and distinguished between TORC1- and TORC2-dependent functions. The results showed a TORC2-specific interaction with the pentose phosphate pathway, a previously unappreciated TORC2 function that suggests a role for the complex in balancing the high energy demand required for ribosome biogenesis.

DOI: 10.1016/j.celrep.2013.11.040
PubMed: 24360963
PubMed Central: PMC4007695


Affiliations:


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Le document en format XML

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<term>Epistasis, Genetic (MeSH)</term>
<term>Gene Deletion (MeSH)</term>
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<term>Phosphoinositide-3 Kinase Inhibitors (MeSH)</term>
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<term>Saccharomyces cerevisiae (metabolism)</term>
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<term>Sirolimus (pharmacology)</term>
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<keywords scheme="MESH" qualifier="métabolisme" xml:lang="fr">
<term>Phosphatidylinositol 3-kinases</term>
<term>Protéines de Saccharomyces cerevisiae</term>
<term>Protéines du cycle cellulaire</term>
<term>Saccharomyces cerevisiae</term>
</keywords>
<keywords scheme="MESH" qualifier="méthodes" xml:lang="fr">
<term>Tests de criblage à haut débit</term>
</keywords>
<keywords scheme="MESH" qualifier="pharmacologie" xml:lang="fr">
<term>Sirolimus</term>
</keywords>
<keywords scheme="MESH" type="chemical" qualifier="pharmacology" xml:lang="en">
<term>Sirolimus</term>
</keywords>
<keywords scheme="MESH" xml:lang="en">
<term>Epistasis, Genetic</term>
<term>Gene Deletion</term>
<term>Pentose Phosphate Pathway</term>
<term>Phosphoinositide-3 Kinase Inhibitors</term>
</keywords>
<keywords scheme="MESH" xml:lang="fr">
<term>Délétion de gène</term>
<term>Voie des pentoses phosphates</term>
<term>Épistasie</term>
</keywords>
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<front>
<div type="abstract" xml:lang="en">Current approaches for identifying synergistic targets use cell culture models to see if the combined effect of clinically available drugs is better than predicted by their individual efficacy. New techniques are needed to systematically and rationally identify targets and pathways that may be synergistic targets. Here, we created a tool to screen and identify molecular targets that may synergize with new inhibitors of target of rapamycin (TOR), a conserved protein that is a major integrator of cell proliferation signals in the nutrient-signaling pathway. Although clinical results from TOR complex 1 (TORC1)-specific inhibition using rapamycin analogs have been disappointing, trials using inhibitors that also target TORC2 have been promising. To understand this increased therapeutic efficacy and to discover secondary targets for combination therapy, we engineered Tor2 in S. cerevisiae to accept an orthogonal inhibitor. We used this tool to create a chemical epistasis miniarray profile (ChE-MAP) by measuring interactions between the chemically inhibited Tor2 kinase and a diverse library of deletion mutants. The ChE-MAP identified known TOR components and distinguished between TORC1- and TORC2-dependent functions. The results showed a TORC2-specific interaction with the pentose phosphate pathway, a previously unappreciated TORC2 function that suggests a role for the complex in balancing the high energy demand required for ribosome biogenesis. </div>
</front>
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<Year>2014</Year>
<Month>08</Month>
<Day>11</Day>
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<Issue>6</Issue>
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<Year>2013</Year>
<Month>Dec</Month>
<Day>26</Day>
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<Title>Cell reports</Title>
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<ArticleTitle>Chemical genetics of rapamycin-insensitive TORC2 in S. cerevisiae.</ArticleTitle>
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<Abstract>
<AbstractText>Current approaches for identifying synergistic targets use cell culture models to see if the combined effect of clinically available drugs is better than predicted by their individual efficacy. New techniques are needed to systematically and rationally identify targets and pathways that may be synergistic targets. Here, we created a tool to screen and identify molecular targets that may synergize with new inhibitors of target of rapamycin (TOR), a conserved protein that is a major integrator of cell proliferation signals in the nutrient-signaling pathway. Although clinical results from TOR complex 1 (TORC1)-specific inhibition using rapamycin analogs have been disappointing, trials using inhibitors that also target TORC2 have been promising. To understand this increased therapeutic efficacy and to discover secondary targets for combination therapy, we engineered Tor2 in S. cerevisiae to accept an orthogonal inhibitor. We used this tool to create a chemical epistasis miniarray profile (ChE-MAP) by measuring interactions between the chemically inhibited Tor2 kinase and a diverse library of deletion mutants. The ChE-MAP identified known TOR components and distinguished between TORC1- and TORC2-dependent functions. The results showed a TORC2-specific interaction with the pentose phosphate pathway, a previously unappreciated TORC2 function that suggests a role for the complex in balancing the high energy demand required for ribosome biogenesis. </AbstractText>
<CopyrightInformation>Copyright © 2013 The Authors. Published by Elsevier Inc. All rights reserved.</CopyrightInformation>
</Abstract>
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<Author ValidYN="Y">
<LastName>Kliegman</LastName>
<ForeName>Joseph I</ForeName>
<Initials>JI</Initials>
<AffiliationInfo>
<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, San Francisco, CA 94158, USA.</Affiliation>
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<LastName>Fiedler</LastName>
<ForeName>Dorothea</ForeName>
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<AffiliationInfo>
<Affiliation>Department of Chemistry, Princeton University, Princeton, NJ 08540, USA.</Affiliation>
</AffiliationInfo>
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<LastName>Ryan</LastName>
<ForeName>Colm J</ForeName>
<Initials>CJ</Initials>
<AffiliationInfo>
<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA; School of Computer Science and Informatics, University College Dublin, Dublin 4, Ireland.</Affiliation>
</AffiliationInfo>
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<LastName>Xu</LastName>
<ForeName>Yi-Fan</ForeName>
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<AffiliationInfo>
<Affiliation>Department of Chemistry, Princeton University, Princeton, NJ 08540, USA.</Affiliation>
</AffiliationInfo>
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<ForeName>Max C</ForeName>
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<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, San Francisco, CA 94158, USA.</Affiliation>
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<ForeName>Ada</ForeName>
<Initials>A</Initials>
<AffiliationInfo>
<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA.</Affiliation>
</AffiliationInfo>
</Author>
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<LastName>Shales</LastName>
<ForeName>Michael</ForeName>
<Initials>M</Initials>
<AffiliationInfo>
<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Rabinowitz</LastName>
<ForeName>Joshua D</ForeName>
<Initials>JD</Initials>
<AffiliationInfo>
<Affiliation>Department of Chemistry, Princeton University, Princeton, NJ 08540, USA.</Affiliation>
</AffiliationInfo>
</Author>
<Author ValidYN="Y">
<LastName>Krogan</LastName>
<ForeName>Nevan J</ForeName>
<Initials>NJ</Initials>
<AffiliationInfo>
<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA; J. David Gladstone Institutes, San Francisco, CA 94158, USA.</Affiliation>
</AffiliationInfo>
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<LastName>Shokat</LastName>
<ForeName>Kevan M</ForeName>
<Initials>KM</Initials>
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<Affiliation>Department of Cellular and Molecular Pharmacology, University of California, San Francisco, San Francisco, CA 94158, USA; California Institute for Quantitative Biosciences, QB3, San Francisco, CA 94158, USA; Howard Hughes Medical Institute, San Francisco, CA 94158, USA. Electronic address: kevan.shokat@ucsf.edu.</Affiliation>
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<Language>eng</Language>
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<Grant>
<GrantID>GM081879</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>GM084279</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>P50 GM081879</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>GM084448</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM098101</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 CA163591</GrantID>
<Acronym>CA</Acronym>
<Agency>NCI NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>GM098101</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<Agency>Howard Hughes Medical Institute</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM084448</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
<Grant>
<GrantID>R01 GM084279</GrantID>
<Acronym>GM</Acronym>
<Agency>NIGMS NIH HHS</Agency>
<Country>United States</Country>
</Grant>
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<Month>12</Month>
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<QualifierName UI="Q000235" MajorTopicYN="N">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading>
<DescriptorName UI="D004843" MajorTopicYN="Y">Epistasis, Genetic</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D017353" MajorTopicYN="N">Gene Deletion</DescriptorName>
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<MeshHeading>
<DescriptorName UI="D057166" MajorTopicYN="N">High-Throughput Screening Assays</DescriptorName>
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<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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<MeshHeading>
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<MeshHeading>
<DescriptorName UI="D012441" MajorTopicYN="N">Saccharomyces cerevisiae</DescriptorName>
<QualifierName UI="Q000187" MajorTopicYN="N">drug effects</QualifierName>
<QualifierName UI="Q000235" MajorTopicYN="Y">genetics</QualifierName>
<QualifierName UI="Q000378" MajorTopicYN="N">metabolism</QualifierName>
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